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Add types for read_metadata() and read_csv_with_index_col() #4037

Add types for read_metadata() and read_csv_with_index_col()

Add types for read_metadata() and read_csv_with_index_col() #4037

Triggered via pull request October 27, 2025 23:02
Status Failure
Total duration 31m 36s
Artifacts 17

ci.yaml

on: pull_request
Matrix: pytest-cram
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
rebuild-docker-image
0s
rebuild-docker-image
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1 error and 4 warnings
build-docs / build
Process completed with exit code 2.
pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.

Artifacts

Produced during runtime
Name Size Digest
coverage
190 KB
sha256:60de040891baf593d050b68133cd75b8cdd54a2aa5695cfd32998fcbb3505a1c
output-avian-flu
98.2 KB
sha256:24d2073c812cf1ece3a0ba795d7368e3db187e67e307eb75bb06d32b0b28d1eb
output-dengue
436 KB
sha256:e95099cc8b1bcbabcbf630d9dc5c0fc0e3a02eec0e0b621e01c54aa27faea704
output-lassa
369 KB
sha256:5ff3b6fe3d775f0e65db465c8a3548c10d6457e04cab954a96ebfd3f73f9ee74
output-measles
3.91 MB
sha256:a2b133e76516572ed63c410aacf71345f04fee25327b16d49cc048c11512026e
output-mpox
14.4 MB
sha256:d7581a1debe9bdc3f7268a956c6e4faa3f65cb928a05924c388d909d90a25310
output-mumps
379 KB
sha256:1f90299d5df986f65fa99effea9c5898f1703e9a66ca0dbb5bd3c8dd775db6e8
output-ncov
726 KB
sha256:38e459a285fc1dec57278a103b8fa5b4a8072dadb60a252552823dc1dbd8ac9d
output-oropouche
588 KB
sha256:748e75391661232e3450b32b4acce2ac23e2521a17bcabf9a868413a0bda36d3
output-rabies
5.28 MB
sha256:43a5ed70f4d79102d28bd0fb3f8c6ca50d011c6836c5076cc53bb673e0b1fc23
output-rsv
1.2 MB
sha256:69d394c99f231b01c050954c1925faf301e0bda4d4daf395b6514dcdac15fa4e
output-seasonal-cov
2.49 MB
sha256:68417175e89fa9018144697084f755f9d0352b27934e1274af59d0734c9f0754
output-seasonal-flu
60.3 KB
sha256:09766182f4f9a9fb307dedf1f92b9be184daec842dbed27ca9e7f891ca8b92b1
output-vcf-input-tutorial
5.03 MB
sha256:aa66769f9f81e3dd3dddc8afe63b45aadf4ac81e8a72a0cf4a8d7bb6c7f98552
output-wnv
241 KB
sha256:44d1a68e061665cf69a9a0374e84d6f8a5074b9427cd702b30d7272f22dc8c23
output-yellow-fever
2.13 MB
sha256:b4646951bf6b0df63eb1751e485b90861b6b8f33a92d71aa95675861ac5edd1c
output-zika
806 KB
sha256:64238b165eaeca573b0acefbeb70006f06c385a3a45e8b1e557284a58c237a7c