Search results

Cooltools pileup slow with mixed chromosomes

Status: Open.

#555 In open2c/cooltools;

· bskubi opened on Jun 30, 2025

cooltools 0.7.1 'from matplotlib.cm import register_cmap' & 'from matplotlib.colormaps import register' import errors (solved by downgrading matplotlib)

Status: Open.

#549 In open2c/cooltools;

· guoyun-chen opened on Mar 19, 2025

Neither <code>from matplotlib.cm import register_cmap</code> nor <code>from matplotlib.colormaps import register</code> works in cooltools 0.7.1 for supporting <code>matplotlib 3.9</code>

Status: Open.

#544 In open2c/cooltools;

· ljw20180420 opened on Dec 11, 2024

first diagonal NaNs for smoothed expected_cis

Status: Open.

#509 In open2c/cooltools;

· gfudenberg opened on Mar 11, 2024

allow alternate reductions for aggregation across diagonals

enhancement

Status: Open.

#507 In open2c/cooltools;

· gfudenberg opened on Mar 4, 2024

synchronize CLI and API defaults for get_expected_cis smoothing &amp; aggregation

enhancement

Status: Open.

#506 In open2c/cooltools;

· gfudenberg opened on Mar 4, 2024

migrate log-smoothing to mini-library

enhancement

Status: Open.

#505 In open2c/cooltools;

· gfudenberg opened on Mar 4, 2024

insulation &amp; edge effects: consider masking?

question

Status: Open.

#503 In open2c/cooltools;

· gfudenberg opened on Feb 27, 2024

snippers: order of "select" and "snip" matters, but should it

Status: Open.

#502 In open2c/cooltools;

· sergpolly opened on Feb 18, 2024

pileup around centromeres

Status: Open.

#491 In open2c/cooltools;

· ratheraarif opened on Jan 28, 2024

Needs a "cool" logo

Status: Open.

#490 In open2c/cooltools;

· thomas-reimonn opened on Jan 28, 2024

systematic treatment of floating point warnings from numpy

Status: Open.

#482 In open2c/cooltools;

· sergpolly opened on Jan 18, 2024