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    114 repositories

    • faersdbstats

      Public
      Generate safety signal statistics from FDA FAERS data
      Shell
      •
      Apache License 2.0
      •33•5•8•0•Updated Nov 13, 2025Nov 13, 2025

    • onsides

      Public
      A resource of adverse drug effects extracted from FDA structured product labels
      Jupyter Notebook
      •
      MIT License
      •8•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • search-ui

      Public
      JavaScript
      •0•0•1•0•Updated Nov 6, 2025Nov 6, 2025

    • search-adaptor

      Public
      An adaptor used to create application, domain specific RESTful web service against Elasticsearch
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • ad_prediction_PLP

      Public
      Random Forest Patient Level Prediction of Alzheimer's Disease 10 years in advance using EHR data. Includes a permuted feature importance (PFI) analysis knee point thresholding.
      R
      •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • omop-concept-automapper

      Public
      An automated system for mapping source medical concepts to OMOP standard concepts using vector similarity search and LLM-based reranking.
      Python
      •
      MIT License
      •2•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • EmbeddingsLibrary

      Public
      1•0•0•0•Updated Jul 28, 2025Jul 28, 2025

    • OhdsiVocabVectorStore

      Public
      Python
      •1•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • r3-neptuner

      Public
      Web application for specifying tables and fields from Neptune for R3 requests
      MIT License
      •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • Geri-DL

      Public
      Deep learning for predicting clinical events in frail elderly
      Jupyter Notebook
      •3•0•0•0•Updated Nov 24, 2024Nov 24, 2024

    • ddi-cds

      Public
      All drug-drug interaction CDS rules written in Drools from the AHRQ funded projects
      Java
      •0•4•2•14•Updated Nov 13, 2024Nov 13, 2024

    • word2vec-service

      Public
      Google word2vec as a service
      Python
      •
      MIT License
      •5•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • cdss-testing-harness

      Public
      JavaScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Aug 2, 2024Aug 2, 2024

    • browserfy-cql-exec-vsac

      Public
      A VSAC-enabled code service for the JavaScript CQL Execution project
      JavaScript
      •
      Apache License 2.0
      •7•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • np-kg

      Public
      NP-KG: Knowledge Graph Framework for Natural Product-Drug Interactions
      Jupyter Notebook
      •
      Apache License 2.0
      •1•1•0•0•Updated Jun 25, 2024Jun 25, 2024

    • ClinicalTransformerNER

      Public
      a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
      Python
      •
      MIT License
      •29•0•0•0•Updated May 11, 2024May 11, 2024

    • SDoH_SODA

      Public
      Python
      •
      MIT License
      •4•0•0•0•Updated May 3, 2024May 3, 2024

    • AutoKG

      Public
      Efficient Automated Knowledge Graph Generation for Large Language Models
      Jupyter Notebook
      •
      MIT License
      •18•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • hades_proxy_manager

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 28, 2024Apr 28, 2024

    • SODA_Docker

      Public
      repo for pipeline development
      Python
      •1•0•0•0•Updated Apr 14, 2024Apr 14, 2024

    • sandbox-community-edition

      Public
      Repository for the free community edition of the sandbox
      Shell
      •16•0•0•0•Updated Apr 8, 2024Apr 8, 2024

    • ULTRA

      Public
      A foundation model for knowledge graph reasoning
      Python
      •
      MIT License
      •79•0•0•0•Updated Mar 22, 2024Mar 22, 2024

    • MME_calculation

      Public
      Python
      •1•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • jupyterlab-limit-output

      Public
      Limit long text output for a single JupyterLab mime render.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •9•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • FOLIO

      Public
      Creative Commons Attribution Share Alike 4.0 International
      •13•0•0•0•Updated Dec 22, 2023Dec 22, 2023

    • prontoqa

      Public
      Synthetic question-answering dataset to formally analyze the chain-of-thought output of large language models on a reasoning task.
      Python
      •
      Apache License 2.0
      •15•0•0•0•Updated Oct 21, 2023Oct 21, 2023

    • np-terminology-imports

      Public
      A natural product terminology that maps botanical natural product Latin binomials to chemical constituents (e.g., metabolites), common names, and spelling variations. The vocabulary is represented using the OMOP vocabulary schema but is not dependent on OMOP/OHDSI tools.
      Python
      •
      Apache License 2.0
      •0•2•2•0•Updated Oct 15, 2023Oct 15, 2023

    • rio-programs-strategic-initiatives

      Public
      Repository for tracking RIO and Strategic Initiatives - Jonathan and Kay
      0•0•1•0•Updated Aug 1, 2023Aug 1, 2023

    • np_name_finder

      Public
      A project to use different computational approaches to identify natural product mentions in unstructured character strings.
      cosine-similarityfuzzy-string-matchingranking-algorithm
      Jupyter Notebook
      •
      Apache License 2.0
      •1•2•0•0•Updated Jul 21, 2023Jul 21, 2023

    • pddi-cds-vscode-validation

      Public
      A project that validates PDDI CDS rules written in CQL using a VS Code environment
      Liquid
      •
      Other
      •1•0•2•0•Updated Jul 12, 2023Jul 12, 2023